Convert submodule PlotNeuralNet into a regular folder

thesis/third_party/PlotNeuralNet/deepsad/Makefile

@@ -0,0 +1,57 @@
+# ====== CONFIG ======
+# Add names (without extension). Example: NAMES = report thesis notes
+NAMES = subter_lenet_arch subter_ef_arch
+
+TEX = $(NAMES:%=%.tex)
+PDF = $(NAMES:%=%.pdf)
+
+.PHONY: all clean clean-aux clobber
+# Keep generated .tex even if a rule aborts
+.PRECIOUS: %.tex
+
+# Default: build all PDFs
+all: $(PDF)
+
+# ====== Rules ======
+# Generate {name}.tex from {name}.py
+# Pre-clean: remove aux + old .tex only if {name}.py is newer (or .tex missing)
+%.tex: %.py
+	@if [ ! -e "$@" ] || [ "$<" -nt "$@" ]; then \
+	  echo "[preclean] $*: removing aux + old .tex"; \
+	  rm -f "$*.aux" "$*.log" "$*.fdb_latexmk" "$*.fls" "$*.tex"; \
+	fi
+	@echo "python $< > $@"
+	@python "$<" > "$@"
+
+# Generate {name}.pdf from {name}.tex
+# Pre-clean: remove aux (keep .tex) only if PDF is out-of-date
+# Post-clean: remove aux (keep .tex) after successful pdflatex
+%.pdf: %.tex
+	@if [ ! -e "$@" ] || [ "$<" -nt "$@" ]; then \
+	  echo "[preclean] $*: removing aux (keeping .tex)"; \
+	  rm -f "$*.aux" "$*.log" "$*.fdb_latexmk" "$*.fls"; \
+	fi
+	@echo "pdflatex $<"
+	@pdflatex --interaction=nonstopmode "$<" || { echo "pdflatex failed; keeping logs for debugging."; exit 1; }
+	@rm -f "$*.aux" "$*.log" "$*.fdb_latexmk" "$*.fls"
+
+# ====== Convenience targets ======
+# Clean everything for listed names (including .tex)
+clean:
+	@echo "[clean] removing aux + .tex for: $(NAMES)"
+	@for n in $(NAMES); do \
+	  rm -f "$$n.aux" "$$n.log" "$$n.fdb_latexmk" "$$n.fls" "$$n.tex"; \
+	done
+
+# Remove only aux/log-type files (keep .tex)
+clean-aux:
+	@echo "[clean-aux] removing aux (keeping .tex) for: $(NAMES)"
+	@for n in $(NAMES); do \
+	  rm -f "$$n.aux" "$$n.log" "$$n.fdb_latexmk" "$$n.fls"; \
+	done
+
+# Nuke everything, including PDFs
+clobber: clean
+	@echo "[clobber] removing PDFs for: $(NAMES)"
+	@for n in $(NAMES); do rm -f "$$n.pdf"; done
+