Convert submodule PlotNeuralNet into a regular folder
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thesis/third_party/PlotNeuralNet/examples/HED/HED.tex
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thesis/third_party/PlotNeuralNet/examples/HED/HED.tex
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\documentclass[border=15pt, multi, tikz]{standalone}
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\usepackage{import}
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\subimport{../../layers/}{init}
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\usetikzlibrary{positioning}
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\def\ConvColor{rgb:yellow,5;red,2.5;white,5}
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\def\ConvReluColor{rgb:yellow,5;red,5;white,5}
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\def\PoolColor{rgb:red,1;black,0.3}
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\def\DcnvColor{rgb:blue,5;green,2.5;white,5}
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\def\SoftmaxColor{rgb:magenta,5;black,7}
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\def\SumColor{rgb:blue,5;green,15}
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\def\poolsep{1}
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\begin{document}
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\begin{tikzpicture}
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\tikzstyle{connection}=[ultra thick,every node/.style={sloped,allow upside down},draw=\edgecolor,opacity=0.6]
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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%% Draw Layer Blocks
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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% conv1_1,conv1_2,%pool1
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\pic[shift={(0,0,0)}] at (0,0,0) {RightBandedBox={name=cr1,%
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xlabel={{"64","64"}},zlabel=I,fill=\ConvColor,bandfill=\ConvReluColor,%
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height=40,width={2,2},depth=40}};
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\pic[shift={(\poolsep,0,0)}] at (cr1-east) {Box={name=p1,%
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fill=\PoolColor,opacity=0.5,height=30,width=1,depth=30}};
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% conv2_1,conv2_2,pool2
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\pic[shift={(1,0,0)}] at (p1-east) {RightBandedBox={name=cr2,%
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xlabel={{"64","64"}},zlabel=I/2,fill=\ConvColor,bandfill=\ConvReluColor,%
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height=30,width={3,3},depth=30}};
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\pic[shift={(\poolsep,0,0)}] at (cr2-east) {Box={name=p2,%
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fill=\PoolColor,opacity=0.5,height=23,width=1,depth=23}};
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% conv3_1,conv3_2,pool3
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\pic[shift={(1,0,0)}] at (p2-east) {RightBandedBox={name=cr3,%
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xlabel={{"256","256","256"}},zlabel=I/4,fill=\ConvColor,bandfill=\ConvReluColor,%
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height=23,width={4,4,4},depth=23}};
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\pic[shift={(\poolsep,0,0)}] at (cr3-east) {Box={name=p3,%
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fill=\PoolColor,opacity=0.5,height=14,width=1,depth=14}};
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% conv4_1,conv4_2,conv4_3,pool4
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\pic[shift={(1,0,0)}] at (p3-east) {RightBandedBox={name=cr4,%
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xlabel={{"512","512","512"}},zlabel=I/8,fill=\ConvColor,bandfill=\ConvReluColor,%
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height=14,width={7,7,7},depth=14}};
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\pic[shift={(\poolsep,0,0)}] at (cr4-east) {Box={name=p4,%
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fill=\PoolColor,opacity=0.5,height=8,width=1,depth=8}};
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% conv5_1,conv5_2,conv5_3,pool5
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\pic[shift={(1,0,0)}] at (p4-east) {RightBandedBox={name=cr5,%
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xlabel={{"512","512","512"}},fill=\ConvColor,bandfill=\ConvReluColor,%
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height=8,width={7,7,7},depth=8}};
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%% fc8 -> cr8 (score32)
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\pic[shift={(0,0,0)}] at (cr5-east) {Box={name=score16,%
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xlabel={{"K","dummy"}},fill=\ConvColor,%
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height=8,width=2,depth=8,zlabel=I/16}};
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%% Upsampling Deconv Layer
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%% Dcnv16
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\pic[shift={(2.5,0,0)}] at (score16-east) {Box={name=d16,%
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xlabel={{"","dummy"}},fill=\DcnvColor,opacity=0.7,height=40,width=0.5,depth=40}};
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%% Dcnv8
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\pic[shift={(.25,0,0)}] at (d16-east) {Box={name=d8,%
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xlabel={{"","dummy"}},fill=\DcnvColor,opacity=0.7,height=40,width=0.5,depth=40}};
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%% Dcnv4
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\pic[shift={(.25,0,0)}] at (d8-east) {Box={name=d4,%
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xlabel={{"","dummy"}},fill=\DcnvColor,opacity=0.7,height=40,width=0.5,depth=40}};
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%% Dcnv2
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\pic[shift={(.25,0,0)}] at (d4-east) {Box={name=d2,%
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xlabel={{"","dummy"}},fill=,opacity=0.01,height=40,width=0.5,depth=40}};
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%% Dcnv envelope
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\pic[shift={(-0.2,0,0)}] at (d16-west) {Box={name=env,caption=concatenation of deconvolved feature maps,%
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xlabel={{"","dummy"}},fill=,opacity=0.2,height=42,width={8},depth=42}};
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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\def\skipshift{6.5}
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%%Joining with previous streams (fcn-16)
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%% score16
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\pic[shift={(0,0,3+\skipshift)}] at (cr5-anchor) {Box={name=score8,%
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xlabel={{"K","dummy"}},fill=\ConvColor,height=14,width=2,depth=14,zlabel=I/8}};
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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%%Joining with previous streams (fcn-8)
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%% score8
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\pic[shift={(0,0,8+\skipshift)}] at (cr4-east) {Box={name=score4,%
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xlabel={{"K","dummy"}},fill=\ConvColor,height=23,width=2,depth=23,zlabel=I/4}};
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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%%Joining with previous streams (fcn-4)
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%% score4
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\pic[shift={(1,0,13+\skipshift)}] at (cr3-east) {Box={name=score2,%
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xlabel={{"K","dummy"}},fill=\ConvColor,height=30,width=2,depth=30,zlabel=I/2}};
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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%%Joining with previous streams (fcn-2)
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%% score2
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\pic[shift={(0.3,0,22+\skipshift)}] at (p2-east) {Box={name=score,%
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xlabel={{"K","dummy"}},fill=\ConvColor,height=40,width=2,depth=40,zlabel=I}};
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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% Final convolution
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\pic[shift={(3,0,0)}] at (d2-east) {Box={name=output,%
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xlabel={{"K","dummy"}},fill=\ConvColor,height=40,width=2,depth=40,zlabel=I}};
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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%%% Draw connections
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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\draw [connection] (cr1-east) -- node {\midarrow} (p1-west);
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\draw [connection] (p1-east) -- node {\midarrow} (cr2-west);
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\draw [connection] (cr2-east) -- node {\midarrow} (p2-west);
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\draw [connection] (p2-east) -- node {\midarrow} (cr3-west);
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\draw [connection] (cr3-east) -- node {\midarrow} (p3-west);
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\draw [connection] (p3-east) -- node {\midarrow} (cr4-west);
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\draw [connection] (cr4-east) -- node {\midarrow} (p4-west);
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\draw [connection] (p4-east) -- node {\midarrow} (cr5-west);
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\draw [connection] (score16-east) -- node {\midarrow} (d16-west);
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%
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\path (cr4-east) -- (p4-west) coordinate[pos=0.4] (after4) ;
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\draw (d16-near)++(0,0,-1+\skipshift) coordinate (d16h);
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\draw [connection] (after4) -- node {\midarrow} ++(0,0,3+\skipshift) -- node {\midarrow} (score8-west);
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\draw [connection] (score8-east) -- node{\midarrow} (d16h) -- node{\midarrow}(d16-near);
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%
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\path (cr3-east) -- (p3-west) coordinate[pos=0.4] (after3) ;
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\draw (d8-near)++(0,0,4+\skipshift) coordinate (d8h);
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\draw [connection] (after3) -- node {\midarrow} ++(0,0,8+\skipshift) -- node {\midarrow} (score4-west);
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\draw [connection] (score4-east) -- node{\midarrow} (d8h) -- node{\midarrow}(d8-near);
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%
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\path (cr2-east) -- (p2-west) coordinate[pos=0.4] (after2) ;
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\draw (d4-near)++(0,0,9+\skipshift) coordinate (d4h);
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\draw [connection] (after2) -- node {\midarrow} ++(0,0,13+\skipshift) -- node {\midarrow} (score2-west);
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\draw [connection] (score2-east) -- node{\midarrow} (d4h) -- node{\midarrow}(d4-near);
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%
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\path (cr1-east) -- (p1-west) coordinate[pos=0.4] (after1) ;
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\draw (d2-near)++(0,0,18+\skipshift) coordinate (d2h);
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\draw [connection] (after1) -- node {\midarrow} ++(0,0,22+\skipshift) -- node {\midarrow} (score-west);
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\draw [connection] (score-east) -- node{\midarrow} (d2h) -- node{\midarrow}(d2-near);
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\draw [connection] (d2-east) -- node {\midarrow} (output-west);
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%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
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\end{tikzpicture}
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\end{document}\grid
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